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UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … the University of Tübingen in Germany. Like me, she’s a genome miner and has been involved with the AntiSMASH and … need the community to be able to come together. And in the past, we’ve had these monolithic databases, NCBI and IMG , …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … This continues our little section on international genome miners, and today we have Francisco Barona-Goméz, or … UGA-Langebio in Irapuato, Mexico. His interests are in microbial diversity and evolution, particularly as how …

… products field as it relates to structure elucidation and genome mining, and how we might start to better connect … which I haven’t seen in natural products a whole lot in the past. This sort of idea of, “there’s a lot of data out … to try and create an open source database of all known microbial natural products. So if you think about natural …

Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … technology in order to enhance the quality of single-cell genomes and directly link functional information with … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …

Phytozome workshop held during the June 2022 CROPS Conference at the … Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and insightful …

… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … interactions, focusing on how environmental stress and microbial communities affect plant growth and productivity. …

… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … Yeah. Yeah. One of the things that I have observed in the past is that it seems like a lot of natural products are …

… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … Woyke T ., Doud D. F. R., Schulz F. The trajectory of microbial single-cell sequencing. Nat Methods 14(11): …

Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … away from the ocean. Microbes. We’ve done those in the past, but the DOE mission changes over time. Yeah. We don’t …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … made publicly available on relevant JGI portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) … and embargo policies. Use-restricted data: In past data policies, data were publicly visible in JGI …

Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … behavior of microbiomes and manipulate them to facilitate microbial solutions to challenging environmental …

… who has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. …