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Natural Prodcast Episode 11: Marnix Medema
… genes, some of these enormous genes that encode these very large enzymes. And I was like, OK, wow, these are really … know what they’re looking at, and hard to do on a large scale. And so– Marnix Medema: But in the end, I do feel that … think there is a lot of things that we can learn from that scientific community, and of course, hopefully they can …
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Partnerships: Myco-Ed
Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, … fungal biology and genomics. Myco-Ed aims to integrate real scientific contributions/discoveries into undergraduate …
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to enable users to seamlessly access and analyze data on scales ranging from single genes and individual genomes to … in microbiome data science. … National Energy Research Scientific Computing Center … DOE System Biology …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … to DOE mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … or outside the scope of the call.  Letters are reviewed by scientific staff of the participating User Facilities, as …
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Natural Prodcast Episode 16: Marcy Balunas
… the traditional sort of academic path or even just the scientific path of “I know exactly what I’m going to do and … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … assays is what those would be. The work that we do at larger scale in order to look at the chemistry a little bit …
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Natural Prodcast Episode 17: Cassandra Quave
… “ethnobotany.” And for the audience, ethnobotany is the scientific study of the ways that people interact with … that would be what it would be is to really help build a larger network of scientists across these countries. So … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided …
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JGI Portals
Our data platforms are a key resource for the broader scientific community and require constant developments to … all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data … system. … IMG/PR is a plasmid genome resource featuring the largest collection of plasmids automatically identified from …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate … of Institutional User Agreements Coordinating with JGI scientific and technical experts Project design with … that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … mining and sequence design with scaling the production of large, difficult to synthesize constructs such as those … methods for efficient QA/QC based on next-generation sequencing technologies including PacBio and Illumina.  The …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … We know each other I think– I consider us as something like scientific cousins. So we both went to Scripps [Institution … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … the deployment of computational workflows at peta- and exa- scales on multicore and many core architectures with the ultimate objective of facilitating omics-based scientific investigations. Development and maintenance of …
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