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DOE JGI Metagenome Workflow
Learn more
Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … was fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
Learn more
Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … bit of entomology as well. DAN: Right. Yeah. No, yeah, Bill does it all. A lot of people I think-- well, maybe I'm … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … pathogen and trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US … 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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New Lineages of Life Group
… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology volume 20, 721–736 … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … discussion with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI plant genomes that are the … accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   … EcoFABs link …
Learn more
FICUS-NERSC/KBASE
… ( NERSC ) is to accelerate scientific discovery at the DOE Office of Science through high performance computing … expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather …
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Natural Prodcast Episode 5: Brad Moore
… special way to be able to hang out with a parent who then doesn’t become your parent anymore, but has this other role … marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I …
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JGI & KBase at PAG XXVII
… 12-16, 2019, in San Diego, Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will … Stop by and chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to …
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … What is beautiful for natural products is nature! Nature does this sort of – if you think of nature as a scientist, … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain …
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JGI Workshops at PAG
… we will present current and ongoing developments at the JGI and KBase toward integrative biology and hear from … We will describe how to apply for a project with the JGI Community Science Program and how you can use the KBase …
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