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Tanja Woyke Elected to American Academy of Microbiology
… the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … Prior to this most recent study, only 12 sigma factors and 200 genes (or 209 sigma factor-target gene pairs) had been … 18, with the number of factor-gene pairs almost doubling to 399. Two of the 11 sigma factors addressed in the study were …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on … BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, …
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Finding the Fermenters
… researchers recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. … genome on KBase … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase … The phenotype and genotype of …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… will help solve energy and environmental challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. … more than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. …
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Microbiome Data Science Team
… and visualization of big data. … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host … Biotechnology  35(8):725-731 Mukherjee S, et al. (2017) 1,003 reference genomes of bacterial and archaeal isolates …
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Events
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What Happens Underground Influences Global Nutrient Cycles
… and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint research call. Submitted …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the next five years. It also includes more than 130 implementation milestones to help track and drive … path, has previously proven successful; in the 2018-2023 five-year strategic plan, the JGI accomplished 90% …
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Fungus Fuels Tree Growth
… and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … ORNL is managed by UT-Battelle, LLC, under contract DE-AC05-00OR22725 for the DOE. The work conducted by the DOE Joint … States Department of Energy under contract DE-AC02-05CH11231. Support was also provided by the NSF Zygolife …
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From Competition to Cooperation
… across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry … U.S. Department of Energy under Contract No. DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics … of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research …
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Fungal Friends or Foes in Plant Roots
… toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a … of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing …
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