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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect …
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From Competition to Cooperation
… across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry … U.S. Department of Energy under Contract No. DE-AC02-05CH11231 within the framework of the Mycorrhizal Genomics … also supported by the Laboratory of Excellence ARBRE (ANR-11-LABX-0002-01), the Region Lorraine, the European Regional …
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Fungal Friends or Foes in Plant Roots
… toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled … of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: … a European Research Council starting grant (MICRORULES 758003), the ‘Priority Programme: Deconstruction and …
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What Happens Underground Influences Global Nutrient Cycles
… and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for support from 53 received through a joint …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved to Berkeley , two of the …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… relative of SOD is P. infestans , responsible for the mid-19th century Irish potato famine.   Shortly before the … . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Natural Prodcast Episode 19: Bill Fenical
… that there was almost nothing. Now, this is back in the 1970s. So, I thought to myself, maybe I can use my … natural products in the ocean weren’t studied up until the 1970s. You know, I mean, people knew about plants’ chemistry ever since the isolation of morphine, 1870 or something like that. And so people were well aware …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … pairs was close to 1. Even the most abundant virus was only 11 times more abundant than its host. There just don’t seem … User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is supported by the NASA Astrobiology Institute …
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Examples: Successful LOIs & Submissions
… cryptoendolithic communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New Investigator Submission … … CSP Functional Genomics Submission … FICUS Example #1 … FICUS Example #2 …
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David Goodstein
… across the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks … gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of Plant Biology 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from … Malmstrom, Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan …
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Secondary Metabolites Program
… … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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