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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … photosystem to unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … report the identification of active Cas enzymes – dubbed Cas14 – that target ssDNA. In contrast, the seminal Cas9 … while Burstein is now at Tel Aviv University. The Cas14 proteins are ~400–700 amino acids (aa) in size, half that …
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DOE Metrics
…   Actual % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208   … 104 Q1 2011 1,500 3,233.30 216 73.27 3,160.03 2100 2208 105 Q2 2011 3,000 4,999.74 167 43.14 4,956.60 2100 2160 103 …
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Natural Prodcast Episode 4: Nancy Keller
… Wisconsin. Like we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should … first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked … do you check if they’re there? Like we always talk about 16S for bacteria, but we don’t talk about it so easily with …
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An Integrated Dataset to Understand Ecosystem Interaction
… Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined offers the global … of Energy operated under Contract No. DE-AC02-05CH11231. The work conducted by the National Microbiome Data …
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Tanja Woyke Elected to American Academy of Microbiology
… the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… an array of defense mechanisms. The Impact There are over 10,400 species of ferns alive today. Boasting adaptations in … Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has set … of Energy operated under Contract No. DE-AC02-05CH11231.This work was supported by US National Science …
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Finding the Fermenters
… records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative … more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible … National Institute of Food and Agriculture grant 2018-67015-27495, the United States Department of Agriculture …
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JGI announces 2025 Functional Genomics awardees
… and biotechnology innovation. Below find a list of the 11 researchers accepted for 2025.  Proposals are accepted …
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Natural Prodcast Episode 19: Bill Fenical
… that there was almost nothing. Now, this is back in the 1970s. So, I thought to myself, maybe I can use my … natural products in the ocean weren’t studied up until the 1970s. You know, I mean, people knew about plants’ chemistry ever since the isolation of morphine, 1870 or something like that. And so people were well aware …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … and were able to identify the associated target genes in 11 of those. That work published in Nature Communications on … of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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Secondary Metabolites Program
… Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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