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Into the darkness: the ecologies of novel ‘microbial dark matter’ phyla in an Antarctic lake
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Natural Prodcast Episode 5: Brad Moore
… moved there in the early ’60s from Berkeley to work on this new budding field of marine natural products. And was at the … NOAA has funded to really look at how we can use our gene technology to predict when blooms are going to happen, that … then the organisms all around us or the, you know, the bio matter that’s around us now? Brad: Yeah, I mean, petroleum …
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Natural Prodcast Episode 11: Marnix Medema
… that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the … Yeah, great. And so generating data is super important, but access to data is also pretty critical. And I see that over … started up my group in Wageningen. And yeah, this builds on technology that was developed, and a group of Michael …
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Secondary Metabolites Program
… and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop … the program strives to facilitate the discovery of new bio-based molecules that can drive innovations in … use by scientists and the public, and provide programmatic access to all sequence and annotation data and their …
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Insights into the phylogeny and coding potential of microbial dark matter
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JGI Portals
… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic … all researchers. … The JGI Genome Portal provides unified access to all JGI genomic databases and analytical tools for … users. It is also a place where the community can upload new data for use by scientists and the public, and provide …
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Environmental Genomics Group
… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A … al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6. …
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DNA Synthesis Program
These advancements contribute to the development of new biofuels and sustainable biochemicals. The DNA Synthesis … context.  … The MycoCosm web portal provides data access, visualization, and analysis tools for comparative … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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Natural Prodcast Episode 23: Aaron Puri
JGI has that really got me into that because we had these new genomes that JGI had sequenced that were of these … brings some new approach or some new way of thinking or technology, that’s usually very beneficial to the field. … reason not to look at as many different ways as possible to access the chemical potential of these or any organisms. So …
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The protein structurome of Orthornavirae and its dark matter.
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Mission
National Laboratory and the HudsonAlpha Institute for Biotechnology . We are located in the Integrative Genomics … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … of Science. In December 2019, the JGI relocated to the newly-built Integrative Genomics Building (IGB), a home it …
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Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
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