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… Mycology Laboratory. Together with his colleague Douglas Schmidt and UC Davis professor David Rizzo, they launched a … disease. Recently the JGI reconnected with Garbelotto and Schmidt out in the forested slopes of Mount Tamalpais in … 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes …

… waters that have an average surface temperature of about 58° Fahrenheit (14° Celsius) — a cool intermediate to the ocean’s extremes of about 28° and 97° Fahrenheit. “The study authors point to this … enzymes that function at low temperature.” said Katrin Schmidt, co-lead author of the study with Kara Martin. “But …

… most diverse range of samples and environments, including natural and agricultural soils, human- and animal-host … talk about genome mining using the GEM catalog in  this episode of the JGI  Natural Prodcast . Using this massive dataset, Nayfach clustered the …

… ( Hear ActinoBase’s site editor  Kate Duncan in the JGI Natural Prodcast podcast , where she talks about this community …

… can take advantage of existing methodologies developed for natural languages to study genomes,” Wang explained.  And … learned some structures and semantics from it,” Wang said. “Natural language has grammar and structure, and words set up … which it is available. Wang estimated that there are 500-800 genome foundation models available on the platform.  ”We …

… Right now, our natural rubber comes from just one tree species: Hevea … are looking into a desert shrub that’s native to North America: guayule.  This episode was made in collaboration with our friends at the …

… The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy Joint … to P.-M.D., from the CNRS to P.-M.D. and H.P. (80|PRIME MicMac), from the Deutsche Forschungsgemeinschaft … to C.J., from ZhuJiang (2019ZT08N628) and the National Natural Science Foundation of China (32022006) to S. Cheng …

… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software and … part of this project depends on lakewater samples — so this episode is a look at how researchers get these specialized …

… the G. Unger Vetlesen and Ambrose Monell Foundations, the Natural Sciences and Engineering Research Council of Canada, … and Environmental Research (DE-SC0004632, DE-SC0010580, DE-SC0016440), and acknowledge the IsoGenie Project …

… for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. Cohort-based learning for … microbiome research community standards. Nat Microbiol . 8(5):751-753. Nayfach A, et al. 2021. A genomic catalogue of … ZoBell Fellowship, Scripps Institution of Oceanography, 2008 Lewis and Clark Field Scholar, NASA/American Philosophical …

… biggest project the JGI had ever put together.  The next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution that made metagenome …