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Workforce Development & Education Outreach
… Area, and established programs affiliated with the Berkeley Lab A-LIFT team.    Overall, our aim is to inspire students … on the JGI-UC Merced internship program, a similar collaboration with AAMU was launched in 2024.  … Through the Berkeley Lab A-LIFT pre-college programs, the JGI has collaborated …
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Fungal & Algal Program
… applications, including sustainable biofuels, biomaterials, natural products, and environmental solutions, fostering a … and ecological diversity of fungi and algae, examining both natural populations and engineered strains. This approach … using genomics and multi-omics by working with research labs and culture collections to produce hundreds of diverse …
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Emiley Eloe-Fadrosh
… was a Bioinformatics Program Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology … Medicine and her graduate work in microbial oceanography at Scripps Institution of Oceanography. She stepped into the … Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). …
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Metagenome Program
… technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, … that shape ecosystems. By decoding the microbial DNA in natural environments, the Program provides a snapshot of … shedding light on microbial metabolism and activity in natural environments. Integrating metatranscriptomes and …
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Biodesign
… The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to user project design, … DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter or …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a … and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where … available from all the facilities participating in the FY25 call, introduces the available APS resources, and contains …
Learn more
Products
… to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call … the relevant JGI  Science Program leads to discuss available options. Note: In 2021, we conducted an extensive … Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs …
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Institutional User Agreements
… DNA Synthesis Appendix  and DNA Sequencing Appendix are available for download.)  After your home institution has … NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s home institution … be required to flow down the User Agreement terms to the collaborators. The lead institution will be required to assume …
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Who We Are
… user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics … Our location at the IGB fosters team science and collaboration with partner organizations such as the DOE … science user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and part of the Biosciences …
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Micro-Scale Applications Group
… Applications group explores the genetic makeup of natural microbial communities using a variety of … recover the genomes of uncultivated microbes. We also apply labeling strategies that allow us to select specific … microbial aggregates after first imaging with various microscopy techniques …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… on plants and microbes, Trent Northen’s group at Berkeley Lab created a fabricated ecosystem – an EcoFAB. These small … And EcoFABs also work well in the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 lab course. …
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Frequently Asked Questions: Project Management
… These materials should be obtained by contacting the collaborator listed on the “info” page for that organism on the … Analysis and annotation of publicly available projects can be accessed via the Genome Portal , at the following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) …
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