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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users and microbiome … at: the role viral infection may play in other natural ecosystems. The video complements a recently published paper …
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Natural Prodcast Episode 7: Ben Shen
… and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s … a new one out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute … And so that’s a big collection of natural product-producing organisms that Pfizer, you know, mined for years to try to …
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Natural Prodcast Episode 1: The Primer, Part 1
… skip straight on to Episodes 4 5 and 6, for some fun interviews, unless you want to fact check us. I like … the common biochemical pathways shared by almost all living organisms. So almost all of these reactions are going on in … the mentality that I’m looking at it with, you know, it’s within a species or microbial population, you have some set …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved …
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User Support
Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate … the JGI is initiated via the Work Initiation Process (WIP) interface. To submit a proposal, users must first log in … and others for data annotation and submission Tracking, monitoring and expediting laboratory processing Consulting …
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Metabolomics
… light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform … extracted from a variety of experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Natural Prodcast Episode 8: Eric Schmidt
… humans accidentally eat it, but it has a really fun and interesting biosynthetic pathway, and I’ll have to do a … love a challenge, and love the idea of working on harder organisms, with the kinds of challenges that usually lead to … the sponges talk to each other? ERIC:   He was looking at interactions between sponges and other organisms. So one of …
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Partnerships: Adopt-A-Genome
… faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … data and tools for comparative analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …
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Workforce Development & Education Outreach
The JGI aims to inspire more students to enter the STEM workforce by fostering an understanding of our role in … … The JGI and UC Merced have had a long-standing internship partnership that started in the summer of 2014. … … foster a profound understanding of research methodologies within the realm of education. … Through the Berkeley Lab …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying … biological contexts. The program fosters intimate, dynamic interactions, offering an unparalleled platform for …
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Natural Prodcast Episode 3: The Primer, Part 3
… area. If this series of podcast episodes has sparked your interest, and you want to learn more, then I highly … time to get to the point of being able to sequence whole organisms, but eventually we got there. But before that … an activator, to go ahead and, and synthesize those genes within a model organism like E.coli , and have it produce …
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Frequently Asked Questions: Project Management
… proposal online using the Work Initiation Process (WIP) interface.    For commonly asked questions about JGI’s … may be appropriate alternatives. See specific protocols within the Sequencing Sample Overview file in our Documents … … The JGI does not maintain DNA, cultures or stocks of any organisms. These materials should be obtained by contacting …
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