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Natural Prodcast Episode 15: Katherine Duncan
… Quite a lot of people in Europe do this traveling by train inter-railing around countries. And I was actually in … produced by microbes, they’re pretty adaptable to other organisms. And we’ve done that with microalgae. They’re … linking like with like. And so if you know any one of those within that cluster, you can begin to infer the function of …
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Natural Prodcast Episode 7: Ben Shen
… and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s … a new one out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute … And so that’s a big collection of natural product-producing organisms that Pfizer, you know, mined for years to try to …
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Natural Prodcast Episode 1: The Primer, Part 1
… skip straight on to Episodes 4 5 and 6, for some fun interviews, unless you want to fact check us. I like … the common biochemical pathways shared by almost all living organisms. So almost all of these reactions are going on in … the mentality that I’m looking at it with, you know, it’s within a species or microbial population, you have some set …
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Soil virus offers insight into maintaining microorganisms
… a protein in soil viruses that may promote soil health. The work was enabled in part by a community data portal of the … can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can shed light … in the study is essentially chewing food to help  microorganisms thrive — and those microorganisms affect a lot of …
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User Support
… Notice Effective July 27, 2026, the JGI will move to a new login service, requiring the use of an … the JGI is initiated via the Work Initiation Process (WIP) interface. To submit a proposal, users must first log in … and others for data annotation and submission Tracking, monitoring and expediting laboratory processing Consulting …
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Industry Engagement Program
… the public sector: academic and government institutions — with capabilities that had remained largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he … a competitive, proposal-based process including peer review. The process is streamlined, with defined deadlines and …
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Natural Prodcast Episode 8: Eric Schmidt
… humans accidentally eat it, but it has a really fun and interesting biosynthetic pathway, and I’ll have to do a … love a challenge, and love the idea of working on harder organisms, with the kinds of challenges that usually lead to … the sponges talk to each other? ERIC:   He was looking at interactions between sponges and other organisms. So one of …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … annotations in all IMG metagenomes. The work is of interest to the Department of Energy (DOE) Office of … frequencies, and an area’s environment hosts particular organisms and metabolisms. This implies that microbiome …
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Natural Prodcast Episode 3: The Primer, Part 3
… area. If this series of podcast episodes has sparked your interest, and you want to learn more, then I highly … time to get to the point of being able to sequence whole organisms, but eventually we got there. But before that … an activator, to go ahead and, and synthesize those genes within a model organism like E.coli , and have it produce …
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50-year fire legacy regulates soil microbial carbon and nutrient cycling responses to new fire
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying … biological contexts. The program fosters intimate, dynamic interactions, offering an unparalleled platform for …
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Metabolomics
… light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform … extracted from a variety of experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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