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Natural Prodcast Episode 19: Bill Fenical
… molecules that bound inside the cells to tubulin, these proteins that allow the cells to divide. We found all sorts … that should be is a microbiological puzzle, but it’s the case. This was one of the first ones that we worked on, … … Episode Transcript …   … In this episode, Natural Prodcast talks to the legendary Prof William Fenical of Scripps …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since I’m off … melt is retained and concentrated. And we have a lot of the mining going on. And so there’s certain areas of the lake … the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head … for enabling large-scale comparative analysis, as well as mining and visualization of big data. … BA in Biology, … et al. 2020. A scoutRNA Is Required for Some Type V CRISPR-Cas Systems. Mol Cell . S1097-2765 Schulz F, et al. …
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Identifying candidate structured RNAs in CRISPR operons.
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A Functional Mini-Integrase in a Two-Protein Type V-C CRISPR System
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acCRISPR: an activity-correction method for improving the accuracy of CRISPR screens
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Rapid cell-free characterization of multi-subunit CRISPR effectors and transposons
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Protein structure determination using metagenome sequence data
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Partnerships: Adopt-A-Genome
… 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria resist foreign genetic … biofilm sample collected in 2018. They looked for and found CRISPR spacer sequences in the samples that corresponded to … Huber and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call …
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Accelerating Metagenomics Discoveries with Deep Learning
… to assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to … (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence … He also aims to detect structural similarities in proteins that low sequence identity may belie. The …
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