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Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient
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Natural Prodcast Episode 10: A Primer on Genome Mining
… uh– ALISON TAKEMURA: I had snow. DAN UDWARY: You had snow already. Yeah, that’s crazy. ALISON TAKEMURA: Yeah. DAN … pieces by hybridization or maybe sequencing if you were rich enough. [CHUCKLES] And once you found a little piece of … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in …
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Genome sequence of the Leisingera aquimarina type strain (DSM 24565T), a member of the marine Roseobacter clade rich in extrachromosomal elements
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The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Natural Prodcast Episode 5: Brad Moore
… his father, the legendary marine natural products chemist, Richard Moore, and get into seaweed, robots, algae, and … different directions. Brad: Absolutely. You know, my father Richard Moore was a professor at the University of Hawaii … with us? Brad:  Unfortunately, not. We lost him about 13 years ago. So, I wish he was still with us because I know …
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Natural Prodcast Episode 6: Marc Chevrette
… have no extra genes hanging around, they still dedicate 20-30% of their genome to secondary metabolism. So it’s very … So, lots of samples. ALISON: Yeah, how many samples have already come through? MARC: I’m the wrong person to ask on … that wasn’t scared of putting gloves on. But, yeah.  DAN: Alright, so we’re approaching our time. So you’re in your …
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Biodesign
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Katherine Louie
… mass spectrometry-based techniques, the platform delivers rich metabolite profiles from diverse biological and … products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen … in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, Kosina SM, Hu Y, Otani H, …
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The microbial ecology of permafrost
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DOE Metrics
… % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 175     2,164     Q4 …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… analysis of these two pathogens, led by the JGI and Virginia Polytechnic Institute State University, was … All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens of … and mechanisms of pathogenesis . Science. 2006 Sep 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News …
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