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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … audio production has been brought to you as part of JGI’s month-long celebration of genomic science and planet Earth. …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March … took effect in six San Francisco Bay Area counties. The JGI, located at Lawrence Berkeley National Laboratory, is … been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: the 50th celebration …
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FICUS
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … speciation events within existing species. Within the JGI’s production pipeline, ANI is used to ascertain the … Group at the Computing Sciences Research Division of LBNL. … Focus Areas … Average Nucleotide Identity (ANI) … …
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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be …
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Environmental Genomics Group
… approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … . Research Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. … Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Who We Are
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in … Data Collective.        … Learn more about our work at the JGI:  …
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Microbiome Data Science Team
… diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), … Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. …
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User Programs
… be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … who have not been a PI on any approved proposal with the JGI Investigators interested in translating genomic … individual calls and other opportunities to work with the JGI … User Support …
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Viral Genomics Group
… dimensions — how big (or small) can tailed phages be?  Nature Reviews Microbiology.   19 , 407 Berg, M. et al. … revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology. 4 , 1895–1906 Roux, S. et al. (2019) …
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