Search

JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG …

… infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in 2006, she was … A, Chu K, Ritter SJ, Reddy TBK, Mukherjee S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of …

Antarctic Museum (MNA-CCFEE). … The JGI was created in 1997 to unite the expertise and resources in DNA sequencing, … and contributing this information freely to the public databases. In 2004, the JGI established itself as a national … mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of interest to the JGI as …

… and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers … viruses (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial …

… encoded in plants, fungi, microalgae, environmental viruses, and bacteria to contribute to a more sustainable …

… or an enhancer, an activator, to go ahead and, and synthesize those genes within a model organism like E.coli , and … is doing a chemical reaction. And then the final product is released. And you’ve got this molecule called erythromycin, … we’ve already sequenced. So, you know, I’ve got a large database of millions of different biosynthetic gene …

… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and … records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative …

… communication. Studying how these compounds are biosynthesized and their roles in the environment, can unlock new … … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory … This is based on extensive computational analyses of BGC size and complexity, BGC sequence composition, metabolic …

TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …

Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week is Professor Cassandra Quave … I’m also a mom of four kids now so ranging from 8 to 17 in age, so my home life is very busy. And I’m also a pet … what season they should be collected, what girth or size of the branches should be, there are all these other …

… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated …

Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to …