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Plant-Microbial Interactions Group
… all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by … that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they … cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 …
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Microbial Program
… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … … Diversification of the microbial product catalog : Beyond minimal draft and improved draft microbial genomes the … into the interactions between microbial organisms and how these interactions might influence their environment, we …
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Webinars on Offerings & Capabilities
Below are a list of webinars that can help you through the submission process by … webinars here . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: …
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Viral Genomics Group
… phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big … Nature Microbiology. 4 , 1895–1906 Roux, S. et al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …
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Plant Program User Advisory Committee
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How Maize Makes An Antibiotic Cocktail
… synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the bioenergy crop switchgrass. The team confirmed just how important zealexins are to maize health. Infections with … was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for sesquiterpenoids, National Science …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522 R Robertson, et. al.  … of the denitrifying thermophile Geobacillus thermodenitrificans subsp. calidus DSM 22629T. M Snook, et. al.  2024 . …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Hear more from Ben Cole and Margot Bezrutczyk in a  recent episode of the Genome Insider podcast. All together, these data offer a granular …
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … and from many users. It is also a place where the community can upload new data for use by scientists and the public, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… of this symbiosis at the cellular level — really understand how those two cell types [of two different organisms] are … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … On the fungi side, underground mycorrhizal networks can serve as a reservoir for carbon compounds that plants …
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Products
… to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing …
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Fungal & Algal Program
… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … and ecological diversity of fungi and algae, examining both natural populations and engineered strains. This … studies. These efforts seek to improve understanding of how fungi and algae contribute to ecosystems and industries. …
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