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… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … And he tells us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …

… describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a really … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these …

… evolution. The Program focuses on developing computational tools and visualization resources that support user analysis … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and metabolomics data, shedding light …

…   Gain access to omics technologies generating community data at zero cost — …

… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … of always working on natural products but just different tools and how to really access and manipulate these pathways … as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary …

… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last … shift in data access. Users were previously limited to accessing data sets within groups, such as plants (via … (AP or SP) Q: What JGI Data Policy considerations do users accessing need to be mindful of? A:  The JGI Data Portal …

… JGI Mission As a U.S. Department of Energy Office of Science … drive biotechnology and biomanufacturing innovation. The JGI contributes to this mission by enabling large-scale … resilience across critical sectors: Energy and bioproducts: JGI user research advances understanding of biological …

… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) … virus diversity and host interactions through global metagenomics. Nature 578(7795):432-436 Sberro H, et al. (2019) …

…   Metabolomics strengthens -omics technologies at the JGI by … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles … Metabolite Analysis & Metabolomics Instrumentation … Metabolomics Platform Lead …

… niche in chemical enzymology. So, we talked about her JGI DNA synthesis project to explore the chemical … when you do a protein purification out of this, like, neon yellow band coming off of your column and collecting … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …

… that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by … to sort of compare, conceptually, that data with genomics and the kind of things that I do with genome mining. … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …