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They sampled soils in four forest ecosystems, extracted RNA to understand gene expression, and developed new tools … who nominated species for sequencing and then sent DNA and RNA samples to JGI,” Grigoriev said. All of these … . … 1000 Fungal Genomes Project on Mycocosm … Datasets …

The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology applications group. The DNA synthesis and assembly group: Our production group … on developing methods for converting digital information from sequence databases into biotechnological or …

… calls. These documents have been shared with permission from the PIs who drafted them.  … Elucidating Sphagnum … … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic … bioenergy crops … Characterization of simplified soil communities with high and low carbon use efficiency across …

… than had ever been done before to look at how multiple forest fungi have independently evolved to establish … , the work was led by a consortium of researchers from the French National Institute for Agriculture, Food and … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional …

… the  product offerings and are unrestricted for use. … For DNA synthesis projects: data are subject to a  two-year … or citation of accession numbers in a peer-reviewed journal, or any public deposition of the data at outside … Proposals accepted before FY22 are transitioning away from producing use-restricted data. JGI proposals typically …

… is a bacterial sacred metabolite, and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, … of primary metabolism. So a lot of the genes and the DNA that’s used for secondary metabolism, they are copies … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …

JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …

Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant … and nitrous oxide). Summary To do this work, the international scientific team led by Petr Baldrian of the Czech … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …

… week, we have our conversation with Professor Eric Schmidt, from the University of Utah. I’ve known Eric for a long time … and so on that we can consult in designing pieces of DNA that we can use to test these issues. The second area … to hear from you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …

… from the ICBG training program, which stands for International Cooperative Biodiversity Groups, and it’s this … resources which provide large, high quality, well curated datasets upon which to base those sorts of tools. So I think … to hear from you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …

… species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control … and distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to … and distribution of their own genome and microbiome datasets, as long as they agree with the IMG/M data release …

… you’ll be hearing about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like … or whatever you’d like, whatever D– you can submit any DNA sequence really, and it will go through SMC’s pipeline. … have just over a million BGC– or sorry, just over a million DNA sources. And so a “source” is some source of DNA. It …