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… Menaka Wilhelm, who is the host of JGI’s other podcast, Genome Insider . If you’re a Genome Insider listener, then … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …

… capabilities to help advance their science by generating data in three overarching categories: DNA Sequencing , DNA … phenotypic, metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To … new methodologies to enhance the integration of various data types.  …

… insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within the Integrated … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the …

… have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life cycle, and embeds metadata and its curation in our … to better understand our broader community of users. Each portal lists a contact, or you can reach out via the form on …

… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … using these together along with all of our computational tools to really build out much more of an integrative … heard me speak recently have heard me talk about the new data portal that we’re building. And I’ve been eager to …

… the idea of taking all the different natural products data that there is and putting things, coalescing them, so … was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … that I’ve appreciated since starting my own group is these tools, in terms of looking at the chemistry produced by …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all …

… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …

… Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National Microbiome Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …

… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… . You can find additional webinars covering how to use our data portals here.  …

… CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …