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… high altitude! And a lot of us moved on to work in simpler systems, like bacteria, where we figure we can make more … learn how to make peptides, rationally. We’d find these tools, we’d understand them, and we’d apply them. And so, I … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction …

…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …

… train students and professors in laboratory techniques and data analyses compile original data for improving fungal … comparative analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no … and potential applications. … The Department of Energy Systems Biology Knowledgebase (KBase) is involved in the …

Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …

… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … biology to ecosystem processes through model laboratory ecosystems. They are small plastic growth chambers where plants …

Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission Tracking, monitoring and …

… which highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still … high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …

… now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … peptides, remember, are big, complicated enzyme systems that really just exist to pull an amino acid out of …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … myriad of bacterial strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. … analysis Relative abundance profiling of non-polar (e.g. secondary metabolites, lipids, etc) metabolites using …

… to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …

MARCY: What are those– they make chemistry! And so they – secondary metabolites, specialized metabolites, however we … to that and what you guys do when you’re exploring your systems. Because I think the JGI has a little bit of a … massive problems just as much as it brings about massive data into really interesting ways to look at our systems. …