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FICUS Overview
There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized …
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Plant-Microbial Interactions Group
… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …
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CSP Large Scale Call
… sustainable biofuel and bioproducts production, leveraging systems-based approaches to unravel functional capabilities … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Webinars on Offerings & Capabilities
… . You can find additional webinars covering how to use our data portals here.  … … Shining a Light: Advanced Photon …
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Natural Prodcast Episode 11: Marnix Medema
… center and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells …
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IMG/M: a data management and analysis system for metagenomes
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources
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IMG/M: integrated genome and metagenome comparative data analysis system
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