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… genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the six …

… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into … alignment files 384/454 Fungal Transcriptome RNA for expression profiling and genome annotation (single …

… said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. Many fungi have beneficial symbiotic relationships with plants and bacteria; …

… of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … not involved with the proposal under which the data were generated (e.g. not PIs or co-PIs) who wish to include …

Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science … may have unknown roles. Some plants and fungi have mutually beneficial (e.g., mycorrhizal) relationships, but not all … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed …

… single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of … strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified …

Tracing gene regulatory networks in the model fungus  Neurospora … The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall … a Joint Genome Institute Community Science Program grant (CSP 982), and funds from the Fred E. Dickinson Chair of Wood …

Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced …

… previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations …

… with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants … interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … activity, Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared with previous …

… and 200 polar/500 nonpolar metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale call .  Process Proposals may be submitted … are strongly encouraged to contact the JGI to determine general feasibility prior to submitting a BER proposal that …

… with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants … interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … activity, Serrano, Cole and their team found over 1,000 upregulated genes, 188 of which were shared with previous …