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JGI Portals
… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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Natural Prodcast Episode 8: Eric Schmidt
Professor Eric Schmidt, from the University of Utah. I’ve known Eric for a long time – we worked together on Aflatoxin … high altitude! And a lot of us moved on to work in simpler systems, like bacteria, where we figure we can make more … It was in pieces. And so one of the things that’s really advanced us over the last few years is, everyone in the …
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Natural Prodcast Episode 17: Cassandra Quave
… small town. We didn’t have AP or IB courses or any of these advanced things that my kids have opportunities to partake … I put a lot of emphasis in my program on research capacity building. And I think this is something I’d love more … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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Metabolomics
… of the role small molecules play in diverse biological systems, sheds light on nutrient cycling, and leads to the … from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview of metabolomics …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying … microbiome dynamics. Together, we will explore cutting-edge advancements in constructing, modeling, and applying these …
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Environmental Genomics Group
… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … strategy for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et … detection of microbial diversity . Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected …
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Project Management Office
… below for details on each step. … Please review our FAQ in advance of contacting the PMO office.  … Before work can …
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Natural Prodcast Episode 2: The Primer, Part 2
… it’s something that we have. There are animals that are known to be sources of secondary metabolites, like sponges … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … metabolites. And they often use primary metabolites as building blocks to produce novel molecules. And so we’ve got …
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Doubling Down on Known Protein Families
… “We’ve more than doubled the number of protein families known up until now, and identified many novel structure … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …
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Plant-Microbial Interactions Group
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Cataloging the Microbes that Manage the Health of River Systems
Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy … develop predictive watershed scale models to manage river ecosystems. One application for the information is the …
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Advances on genomics, biology, ecology and evolution of Brachypodium, a bridging model grass system for cereals and biofuel grasses
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