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Project Management Office
The JGI Project Management Office carries out a number of … to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and … Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number … system. For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense …
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Microbiome Data Science Team
A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … et al. (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. … uncovers gaps in amplicon-based detection of microbial diversity.  Nature Microbiol .  15032 Eloe-Fadrosh …
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DOE Metrics
… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … hours.   FY 2023 DOE Metrics There were 2,373 unique* JGI users in FY2023 , which includes Principal Investigators … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …
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Natural Prodcast Episode 16: Marcy Balunas
… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t … ant has behaviors but it also has this bacterial symbiont Pseudonocardia that lives on its chest and protects the …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … microorganisms that may be of interest to you and folks at JGI. These organisms we’re finding– at least by looking at … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called …
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Data Policy
… the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … of data to support their use by those generating data. The JGI Data Policy applies to research data and analysis … : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … right, got it. And just thinking about it from I know the JGI perspective here at the Joint Genome Institute, because … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of … In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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Natural Prodcast Episode 20: Brian Bachmann
… you can always find at naturalprodcast.com or through the JGI website at jgi.doe.gov . There’s a lot more to talk about there, and … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of … for their ability to produce desired chemicals. … The JGI's DNA Synthesis Science Group supports researchers … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory (Berkeley Lab), through the JGI Community Science Program . The metagenomes were also …
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