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DOE Metrics
… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … hours.   FY 2023 DOE Metrics There were 2,373 unique* JGI users in FY2023 , which includes Principal Investigators … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …
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The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness
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Data Policy
… the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … of data to support their use by those generating data. The JGI Data Policy applies to research data and analysis … : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted …
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Plant-Microbial Interactions Group
… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: Katsuma Yonehara (Tokyo University) …
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Natural Prodcast Episode 16: Marcy Balunas
… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship?  … do when you’re exploring your systems. Because I think the JGI has a little bit of a different approach. We don’t … a long time.  MARCY: It will. Are you going to solve it at JGI?  DAN: No.  [LAUGHING]  ALISON: Don’t shortchange JGI!  …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … microorganisms that may be of interest to you and folks at JGI. These organisms we’re finding– at least by looking at … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of … In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of … for their ability to produce desired chemicals. … The JGI's DNA Synthesis Science Group supports researchers … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … right, got it. And just thinking about it from I know the JGI perspective here at the Joint Genome Institute, because … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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JGI at the AGU Fall Meeting
… on Intensive Agricultural Lands Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential … A finely tuned, time-resolved analysis of viral and microbial communities in the Erpe river” 8:30am Convention … continental-scale context for thousands of newly sampled microbial genomes from North American watersheds (Invited)” …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut … labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in … and then installed at the  Integrative Genomics Building , JGI’s newly-built home located in the heart of the Berkeley …
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JGI Earth Month: Wetlands Work in #TenHundredWords
DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science …
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