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Calculating the Costs of Multiple Switchgrass Gene Copies
… range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … 8X switchgrass is a valuable resource towards the effort to generate climate resilient switchgrass for bioenergy …
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Understanding Wildfire Recovery, Starting in Soil
The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to …
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Genome sequence of Phaeobacter daeponensis type strain (DSM 23529T), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … known methanogens. With the help of this information, the researchers found evolutionary relationships between …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… human chromosomes: Lawrence Berkeley National Laboratory researchers were studying Chromosome 5, which contains about … race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … Human Genome Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … and transfer that ability into industry, specifically to generate biofuels,” Hess said.  (Only 90 of those genes were …
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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains … of interest and gene copy number variation across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant …
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Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions
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Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria
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Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts
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Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias
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Comparative proteomic profiles of the marine cyanobacterium Trichodesmium erythraeum IMS101 under different nitrogen regimes
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