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JGI@25: From Life at the Extremes to Editing Genomes
… to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a … system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around … is here .) Working with the JGI, Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … Virus Genome (MIUViG). Nature Biotechnology 37, 29–37. Berg et al., 2021. Host population diversity as a … Giant virus diversity and host interactions through global metagenomics. Nature 578, 432–436. … DOE BER Early Career …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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Doubling Down on Known Protein Families
… (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire … similar to anything we’ve already defined.  “A huge percentage — around 30–50% of the protein families that we knew so …
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Supercharging SIP in the Fungal Hyphosphere
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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality … the team found that bacterial isolate genomes represent 9.73% of the total estimated diversity of the available …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). Support was also provided by the National …
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NeLLi — Symposium on New Lineages of Life
… and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …
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Expanding Virophage Diversity
… approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … them without previously known representatives). Of these, 89 contigs were considered to be complete genomes, and their … the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene …
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2024 Progress Report
… secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community … outreach activities and hosting visiting scientists at all stages of their careers. Our staff have organized, chaired …
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Trent Northen
Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
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