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… system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around … is here .) Working with the JGI, Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm … for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV …

… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … Biology, Université Blaise Pascal, France … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades … Giant virus diversity and host interactions through global metagenomics. Nature 578, 432–436. … DOE BER Early Career …

… genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …

… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire …

… the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by the U.S. Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by …

Metagenomic datasets could help map out microbial diversity … biofuels and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …

… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and …

The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the … and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …

… approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) diverse new … has extended the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the …

… secondary users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community … outreach activities and hosting visiting scientists at all stages of their careers. Our staff have organized, chaired …

Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … genotypes and environments. 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. …

… think like it’s, it’s this unique time where the preceding 300 years, that change was not occurring at that pace, right. And then, hopefully, 3-400 years down the road we’ll have a steady state where we …