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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely available online …
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics … tools for comparative genomics and community annotation. Presented by Igor Grigoriev, Steven Mondo, Steven Ahrendt and Sajeet Haridas. …
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PhycoCosm Tutorial
Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint …
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Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … as genomes sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … below a pine or an oak tree, in Sweden or Quebec.  Ecologically, Martin suggests this redundancy is protective, a bit …
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