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Robert Bowers
… studying the diversity, physiology and community ecology of microbes sampled from the natural environment. …
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … more.  Microbes excel at recycling the abundant miscellanea of their surroundings. Case in point: for us, the smell of … Genomes to Structure and Function focus area of the JGI’s DNA Synthesis Science Program help advance DOE interests in …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … Joint Genome Institute, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated … his postdoctoral studies with Carl Woese at the University of Illinois at Urbana-Champaign and at Argonne National …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated … program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … in GOLD. “Besides these, he curated several small sets of phylogeny, biosample metadata tasks we assigned.”       …
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Matthew Kellom
… environment, and using metagenomics to study these complex natural systems. Microbial communities living in … places that are considered to be inhospitable to humans are of particular interest. Matt also supports various CSP and …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … a rumen sample, you’re going to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and … four strains of anaerobic fungi also, unexpectedly, secrete natural products . Those results showed that these fungi may …
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … set of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … we found was related to tissue-specific gene expression variation within genotypes. The root transcriptome was more …
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