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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … data set will help identify how different elements of the ecosystem interact and respond to changes in the … Summary The 27 samples studied by researchers came from two environments: natural forests and plantations managed …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The … and strategic plan. The IAC serves as the key external advisory panel for the JGI’s Director, CIO, and …
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The microbial ecology of permafrost
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Microbial Diversity for Biotechnology
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Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … JGI-UC Merced Internship Program was developed between the two institutions to help train the next generation … aid the accessibility and reproducibility of my project methods, and I hope that this open-source platform will be …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … Wales (UNSW)-Sydney professor Rick Cavicchioli compared two strains of haloarchaea from different Antarctic lakes. … cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme …
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Supercharging SIP in the Fungal Hyphosphere
… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  … National Laboratory was conducted under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work …
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … of these algorithms, inspired by communication networks found in nature, allows machines to “learn” features. … two vectors,” said Sevim.  While there are alignment-free methods for nucleotide searches, such as  Mash and  BBsketch …
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