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Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
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Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community
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Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes.
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … four sharpening the axe.” In this study,  published in  Metabolic Engineering , a team of researchers likewise honed … included researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User …
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … of community members and their genome-encoded metabolic capabilities and interactions. Supported by JGI’s …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and mentors Igor Grigoriev and Bishoy Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a …
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Global overview and major challenges of host prediction methods for uncultivated phages
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An expanded evaluation of protein function prediction methods shows an improvement in accuracy
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year … community with advanced genomic capabilities, large scale data, and professional expertise while responsibly …
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