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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no … by the United States Department of Agriculture National Institute of Food and Agriculture grant 2018-67015-27495, …
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Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … on their summer projects. Watch the short video here to see what they had to say about their experiences and what … of a multiplex genomic integration system for the selection of genes essential for specialized carbon …
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A User-Centered Approach to Accessing JGI Data
… year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more … common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a structural … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The … Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … and determination as they came onsite. From data carpentry to science communications, their schedules were filled with … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … and animals by combining computational genome analysis, sequence-based genetic methods, and comparative … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum
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Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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