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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, researchers have gained … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New …   Learn more about our individual calls and other opportunities to work with the JGI …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces … ( Hear ActinoBase’s site editor  Kate Duncan in the JGI Natural Prodcast podcast , where she talks about this … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to … the largest class of fungi, by lifestyles. The machine “learned” to identify data generated in part through … insights into how these fungi have adapted to stress and host specificity, particularly regarding the effects of …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came … domains every virus carries, and who is their likely host. We’ve made all of that information fully free and …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… around the country recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … for the DOE candidate feedstock poplar. “You’re collecting natural diversity and you’re planting natural diversity in … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. … looking at: the role viral infection may play in other natural ecosystems. The video complements a recently …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in … quantitative analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022. …
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UC Merced Interns Reflect on Their JGI Summer Projects
… develop presentation skills as well as build their network in the field of genomics and scientific research. The topics … — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic … Docs, and GitHub enabled virtual collaboration. JGI also hosted events to enable students to showcase their work and …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … blooms. Their work takes a view across many scales: from natural blooms in the ocean, down to smaller, induced algal … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … they often need unique conditions and a specific microbial host to replicate. Sequencing genetic material directly from … what those viruses can do. For example, understanding virus-host dynamics in soil microbiomes could allow for more …
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