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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… began to offer a window into viral existence. Along with highlighting the viruses in a given sample, … have better, easier access to these viral genomes. The new database was called IMG/VR. It featured samples from … so many genomes, JGI researcher Antonio Camargo developed a new pipeline for identifying viruses across many thousands …
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THE Bioenergy Tree
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in the tube look like a scoop of stormwater, complete with leaves, debris, and even lighter threads in the mix. … DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … ,” Gonzalez-Rizzo explained. “This kind of discovery opens new questions about bacterial morphotypes that have never …
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Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, … is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently published a Nature …
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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. Many microorganisms hold clues to processes like biodegradation, with potential …
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A Collaboration to Improve Plant Genome Annotations Across Species
… the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which … groups joined the project to contribute to the data for six new species. I must mention that some of the members from … JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the under-sampled …
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Help from Citrus’ Bitter, Hardier Cousin
… for  Citrus , appeals in other ways. It better tolerates cold, withstands pests, and, especially tantalizing, resists a …
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A One-Stop Shop for Analyzing Algal Genomes
… is one of the largest data repositories of its kind, with an interactive browser that allows algal scientists and … sprung up in almost all branches of eukaryotes (organisms with a nucleus). In part because of this evolutionary … Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, diversity, …
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Axel Visel
… at the DOE Joint Genome Institute, Dr. Visel also holds appointments as a Senior Staff Scientist at Lawrence … of scientific policy, engaging in interactions with the scientific community at large. … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … unique challenges for the community. JGI is partnering with NVIDIA and Oak Ridge National Laboratory (ORNL) to make … assistance from mentors and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… next-generation feedstocks through CRISPR-edited poplars with optimized lignin, engineering heat-resilient algae for … microbial bioreactors. This genomic research creates new opportunities for biomanufacturing, from industrial … Ecological Observatory Network (NEON) in collaboration with the National Microbiome Data Collaborative (NMDC) to …
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