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A global metagenomic map of urban microbiomes and antimicrobial resistance
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Sequence-based bioprospecting of myo-inositol oxygenase (Miox) reveals new homologues that increase glucaric acid production in Saccharomyces cerevisiae
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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Optimized CRISPR Interference System for Investigating Pseudomonas alloputida Genes Involved in Rhizosphere Microbiome Assembly
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From Competition to Cooperation
… were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have … how the mutualistic associations allow host plants, such as candidate  bioenergy feedstock crops, to acquire nutrients. … mycorrhizal species. The 62 mycorrhizal species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various … (Berkeley Lab) describe a computational pipeline that can specifically scan for those snowflakes, or RNA virus … samples around the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … in our workplace and seek to establish with our stakeholders. The guiding principles for participating on JGI …
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How Filamentous Fungi Sense Food
A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored in depth for multiple models and their close …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 … and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — but not doors — and robots handle a bunch of benchwork. …
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Eric Olo Ndela
Eric’s research is focusing on the development of new computational approaches to identify and characterize …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The … pathways could lead to the discovery of genes that could be used for multiple biotechnological applications. These … include crop improvement insights that could benefit candidate biofuel crops. Summary On the TV show “Antiques …
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