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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) program , which awards graduate students the opportunity to …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the … He was one of the eight JGI researchers on the 2023 Highly Cited Researchers list, and has appeared on the list …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … to grow energy crops more efficiently. Summary To interrogate the close partnership of endophyte  M. elongata and … is managed by UT-Battelle, LLC, under contract DE-AC05-00OR22725 for the DOE. The work conducted by the DOE Joint …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… to submit white papers to the Community Science Program’s  Functional Genomics call for proposals .  On July … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that …
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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. … So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen and Katherine Louie …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of … Rebecca Smith of the University of Wisconsin, Maggie Sogin of the University of California, Merced, and Kevin …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described … collaborators at the Center for Scientific Research and Higher Education at Ensenada (CICESE) in her first microbial …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature Microbiology an important addition to the synthetic biologist’s … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … It was previously assumed, due to the wide and varied geographic footprint of the plant, that eelgrass began …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
This year’s cohort for the JGI-UC Merced Internship Program was brimming with excitement and determination as they … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene … (1996) … List available on Google Scholar … Education … Publications …
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I-Min (Amy) Chen
… on semantic and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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