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Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population
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Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
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Extracting the Secrets of Secondary Metabolites
Secondary metabolites are microbial compounds produced in response to hardship or competition. They make up the … yield new tools for pest control. Secondary metabolites are highly regulated in bacteria, making it difficult to … of these BGCs from one organism into an alternate host via a landing pad that consists of a cre recombinase gene …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library Construction … across JGI plant genomes. She has appeared on the annual Highly Cited Researchers list assembly by Clarivate … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
Cone Pool in Mono County, California, scientists have used sequencing methods for the first time to comprehensively … sequence data) can suggest different predatory behaviors. A high relative abundance of virus can suggest a so-called “Kill the Winner” strategy: a virus infects a highly abundant host (a “winner,” in terms of numbers), …
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Nikos Kyrpides
Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters Highly Cited Researcher (Biology & Biochemistry) (2014-2023) … Research and Analysis ( CAMERA ). … Education … Selected Publications … Awards and Service …
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Ancient Algae Reveal Secrets of Plant Evolution
… plants to transition to terrestrial life.  These led to highly detailed assemblies for three strains of  Zygnema … Researchers identified key genes associated with stress responses and compared them with those found in modern … also discovered that genes involved in growth and stress responses are interconnected, suggesting that this genetic …
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Synthesis
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… that live there.  A  Communications Biology article highlights how one microalga collected from water on the ice … ecosystems. Researchers studied P. psychrophila’ s stress response by comparing how it responded to being moved to a … This was facilitated in part by RNA library preparation and sequencing from the U.S. Department of Energy (DOE) Joint …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. … Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein … “ Streamlining computational studies of misfolding proteins via high performance computing ” Erika Maquiling, Leonel …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so rewarding,” Wint said. For Axel … rewarding. Wint is listed as the primary author on this publication and drove the entire project, Visel explained. …
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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