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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus … Myburg, Wegrzyn, Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest … Laboratory scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and materials. …
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … that I wanted to include it. This is a conversation with Marc Chevrette. Marc is a postdoc in Jo Handelsman’s … really similar to like human crops like corn. There’s low genetic diversity in the crop. So they’re susceptible to …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during … School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed research … is the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's …
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Boosting Small Molecule Production in Super “Soup”
… Yeast strains engineered for the biochemical conversion of glucose to value-added products are limited in chemical … strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … the yeasts received fine-tuning of gene expression through genetic rewiring with CRISPR-Cas9 that enhanced their …
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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out … the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in as a representative measure of …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors … multi-terabyte datasets assembled for the first time with  MetaHipMer , taking advantage of scalable parallel … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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First Monoploid Reference Sequence of Sugarcane
… . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many … species, sequencing programs generally focus on a genotype with two identical sets of chromosomes to produce a … as an entire sugarcane gene and its associated regulatory elements. Sequenced segments of sugarcane-genome-containing …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex … , employ the evolutionary strategy we are far more familiar with: differentiating into male and female sexes. For the … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to …
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