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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint … for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize poorly-studied algal and viral …
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JGI User Executive Committee Expands
… of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback on … Area. He has partnered with the JGI through several user programs. He’s also bringing his fungal genetics expertise …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… Michael Brandt (Operations Deputy), Horst Simon (Science Deputy), Jeff Blair (Chief Laboratory Counsel) and … in his event remarks. “I feel that is something crucial to our success, and Ray has been that. That person needs … to the ever-shifting landscape of funding Federal for programs, noted that “Ray is someone who just will get it …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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A Complex Confection Decoded: Sugarcane Reference Genome
… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … cultivar R570 has been generated and  reported in the journal  Nature . The work led by researchers at Australia’s … the HudsonAlpha Institute for Biotechnology and the Arizona Genomics Institute. The work was partly enabled by the JGI’s …
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Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil
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Hidden diversity of soil giant viruses
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Diversity in the soil virosphere: to infinity and beyond?
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Tetranucleotide frequencies differentiate genomic boundaries and metabolic strategies across environmental microbiomes.
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal … relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from … able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… York Times 2022 List of Firsts as well as other year-end science discovery lists.  Updates to the Genomic … Portal were instrumental to  a study that looked into how soil viruses , and in particular a chitosanase protein, can … crop, as well as the discussion of key cassava genomic resources. Genome annotations for cassava are available on the …
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