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Busting the Unbreakable Lignin
… fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … yield fuels, and removing lignin in order to do so is a resource-intensive process. Now, a new study shows how … conducted RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of Energy (DOE) Joint …
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Forming Scientific Connections and Building Community
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … who were able to give me some guidance in my academic journey.” Mentors: Deze Kong & Yasuo Yoshikuni Project: “ … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …
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Jeremy Schmutz
… Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about … North Central College, Naperville, IL BS in Computer Science, North Central College, Naperville, IL …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … Path for Metagenomics Researchers Building upon these resources, KBase, a multi-institutional collaborative knowledge …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… has since been extended statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National … working to address some of the most pressing challenges of our time. For more information, please visit  …
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JGI Hosts GPU Hackathon in May
… processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the Oak Ridge … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, aims to explore applications in the … “JGI is one of the largest producers of environmental genomics data and has a strong reputation in the community,” …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … generate from carbon dioxide they take in. In this way, encouraging this symbiosis could improve the way soils store … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
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Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat
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Acquisition of host-derived carbon in biomass of ectomycorrhizal fungus pisolithus microcarpus is correlated to fungal carbon demand and plant defences.
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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Phylogenetically distinct fungal expansins show different binding preferences towards cellulosic materials and enhance cellulase activity
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