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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … bicolor holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international …
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An Addiction Crucial to a Fungus’ Reproduction
… relies on bacteria to regulate key components of its reproductive machinery The Science To better understand how beneficial organisms … As these oil-producing fungi are potential sustainable sources of alternative fuels, so understanding … This research was supported by the National Science Foundation and the National Institutes of Health. …
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The fungus that made itself at home
… Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar … for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the fungus has … environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo scientists and …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … through The Paul G. Allen Frontiers Group, the National Science Foundation (MCB-1244557 to J.A.D.) and the Lawrence …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not … Depending on the project setup, we can include as part of our data analysis plan mapping of short-reads datasets … as well as gene- and contig-level coverage. Other related products Q:  Does JGI offer long-read metatranscriptome? …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s … as carbon sinks and minimize their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses … Harvesting peat for energy has been increasingly discouraged due to associated greenhouse gas emissions as well …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … applications in industry and biotechnology for the production of  clean energy . Summary Arbuscular mycorrhizal … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … to create pipelines, tools and other standardized data resources that the global research community can access and use … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Pinning Down a Piece of Photosynthesis
… photosynthesizers cycle carbon in changing conditions. The products of photosynthesis are easy to point out. Plants, … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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Eelgrass Proves to Be Much Younger Than We Thought
… about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the … many species able to occupy the regions where eelgrass flourishes. The plant can thrive in both frigid and tropical … Lawrence Berkeley National Laboratory, provided sequence resources — including the eelgrass genome assembly that enabled …
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