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Trent Northen
… 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … in the Methodology section as “those that rank in the top 1% by citations for papers published and cited between … an Aspergillus fungal subgroup, section Nigri. Aspergillus fungi play important roles in areas ranging from industrial …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more … deeper understanding of the bacteria potentially holds the key to discovering new antiviral medicines and treatments … and connect users to one another. The aim of ActinoBase, originally launched by the UK’s John Innes Centre, is to …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … The team found that, unlike pathogenic or mycorrhizal fungi (mutualist symbionts that induce structural changes in …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … the JGI and Bigelow Lab led to the identification of key microbial culprits in carbon fixation in the dark ocean. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI … Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… best in certain regions. Most plant species have adapted to their local environments; for example, crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … of switchgrass across the garden sites depended on the origin or collection location of the individual switchgrass …
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An Integrated Dataset to Understand Ecosystem Interaction
… poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … data set will help identify how different elements of the ecosystem interact and respond to changes in the … trees and associated microbial communities. This revealed key metabolic pathways and metabolites associated with the …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … in low abundances. The Impact Microbes are known to be key contributors to the planet’s biogeochemical cycles, but … No. DE-AC02-05CH11231. The work was supported by a JGI Director’s Science award. The DOE Joint BioEnergy Institute …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … United States. They also provided multiple access points to the information. The team harnessed a community-science … land use or water quality changes. Summary Rivers are key components of watershed ecosystems, where rain or snow …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that showcase our collaborations and capabilities to enable great science that will help solve energy and … shrubby grasses growing by the side of the road become a key player in biomass-based fuels.   …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of Genomic …
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