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New Tricks with Old Bones
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How to Submit Sequencing Samples
Small RNA Sample QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample … Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality … All shipments originating outside the United States must also include a completed Export Certification Form . 2) Obtain …
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Crops as Tough as World Cup Turf
In our warming world, we’ll need corn, sorghum and other crops to grow well in worse conditions: … Guangchao Sun and Vladimir Torrres have looked into traits that could transfer from grasses into other crops.  One … to be the same species that covered World Cup pitches in 2022.                     …
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Tracking the Origins of Methane-Producing Microbes
… of the carbon dioxide trapped in biomass each year to do so. As such, they are considered to have a substantial … three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Searching for new branches on the tree of life
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Micro-Scale Applications Group
… using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize …   … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes … … The JGI provides users access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover …
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VEGA Symposium
… and industrial applications.  Thank you to all of our in-person and virtual attendees! Click here for the event photos. Keynote Speakers Katrine Whiteson , UC Irvine Chase Morgan , UC San Diego Britt Koskella , … College of Medicine JGI Organizers Simon Roux, Jonelle Basso, Maureen Berg, Antonio Camargo, Frederik Schulz, Emiley …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in … since 2009 and heads the Single Cells group . Woyke also holds appointments as Adjunct Scientist at the Bigelow … a 2014 Berkeley Lab Director’s Award for Exceptional Scientific Achievement , and was among the Lab’s 2015 Women …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science … and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses survive. … … This work was supported through a USDA NIFA award (2021-67019-34608) to M.J.W. FTICR-MS analyses were performed …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… bioenergy feedstock switchgrass has adapted to expand its habitat range. But at what cost?  A collaborative team … at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … bioenergy feedstock switchgrass has adapted to expand its habitat range, but at what cost? In the following guest …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of … by these PIs will address a broad diversity of important scientific questions relevant to the DOE mission, and we …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. … marker genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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