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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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Environmental Genomics Group
… With the development of high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies (Hofmeyr et al. 2020) we are able to quantify isotope incorporation across a … genomes and other genomic elements (Vyshenska et al. 2023). … microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, T., Varghese, N., Roux, S. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. Work at the Molecular Foundry was supported by … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. This research was developed with funding from …
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Work With the JGI! Tips for a Winning CSP Proposal
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. … X., Nocek, B., Li, S.N., Savchenko, A., and Eltis, L.D. (2016) The activity of CouR, a MarR family transcriptional …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the … before this study. A statistical comparison of evolutionary trees built from mitochondrial and nuclear genomes showed … gone unrecognized. In total, these efforts produced nearly 10,000 new annotations of fungal mitochondrial genomes, the …
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VEGA Symposium
… & Postdocs – $200 Regular Rates (begin September 19, 2026) General & Berkeley Lab Attendee – $300 Students & … (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years … MLK Building, in the East Pauley Ballroom, November 18–19, 2026. The poster session will be held on Nov. 18 in the …
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The More the Merrier: Making the Case for Plant Pan-genomes
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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