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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… these bacteria evolved could help inform engineering microorganisms for biofuel production and other sustainable … communities living in extreme conditions. The microorganisms found there utilize a unique array of chemicals … study published in  The ISME Journal     focused on a class within  Chloroflexota called  Dehalococcoidia . Some  …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… researchers on projects related to understanding how the interactions between viruses and their host microbes impact … to study the human virome; Explore how the human virome interacts with us; and, Make virome data available to the …
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Graduate Students Get Thesis Research Opportunity at the JGI
Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … of microbial communities in wetland carbon cycling and the interactions of plants with their associated microbiomes. …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… crop breeders and researchers predict how crops and model organisms may evolve.  Determining the genetic codes of … basic ways. In “autopolyploids”, genome duplication occurs within a single species. By contrast, “allopolyploids” arise … history of strawberry in such detail is biologically interesting,” Session said.  The Kmer Subgenome …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… these ecologically relevant species. Another focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic …
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How Filamentous Fungi Sense Food
… and hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide … and complex components present in plant biomass. This is of interest for bioenergy researchers looking to improve the …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… methane, and nitrous oxide). Summary To do this work, the international scientific team led by Petr Baldrian of the … fungal genes, because, unlike bacteria, they often carry interrupting sequences, called introns. Introns are like … Baldrian’s team distinguished four specific habitats within the forest floor: the leaf litter on top of the soil, …
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Improving Microbial Genome Annotations in an Integrated Database Context
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GenomeVISTA—an integrated software package for whole-genome alignment and visualization
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An Integrated Computer-Aided Design and Manufacturing Workflow for Synthetic Biology
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Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes
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