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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days occur in April: the 50th celebration of Earth Day on April 22, and DNA Day on April 25. Since …
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Deconvolute individual genomes from metagenome sequences through short read clustering
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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Styling for Safety: PPE, It’s the JGI Way
… Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the lab. To address this issue, we … to provide our colleagues with a visual representation of JGI PPE requirements. When working in the lab, it is … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … of specific 5mC methyltransferase (MTase) variants. Using new sequencing technologies for producing both reference …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … choose the genome you’re after as the dataset. From the (new and improved JGI Data Portal).  Go to  … PhytoMine and keep it current given the accelerated rate of new genome releases in Phytozome v13. If the genome(s) …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … DNA floats freely within the cytoplasm of their cells. This newly discovered species of bacteria keeps its DNA more … carbon stored in coastal sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… Newly developed chemiluminescent biosensors shed light on … di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … making them useful in a wider range of environments. This new technology enables researchers to directly …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial …
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Leo Baumgart
… his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … team responsible for piloting and operationalizing new genomic technologies, integrating automated liquid handling and bioinformatics pipelines to transition bench-scale methods into …
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Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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