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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight into …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to their environments, two gene families—peroxidases and nucleotide-binding leucine-rich repeats (NLRs) —stood out for …
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Steven Wilson
… group is responsible for developing and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … the JGI as an Instrumentation Engineer where he added structure and process to the group by developing SOPs for …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of Conduct. Event organizers will enforce this Code throughout the … event is to build a stronger community. Our goal is to create an environment where everyone feels welcome to …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … recently, these long-reads have been applied to DNA methylation analysis as well as improving metagenome assemblies. … Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … the complicated evolutionary history of strawberry in such detail is biologically interesting,” Session said.  The …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, RNA viruses store their …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes … single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the … to find novel functions that may impact microbiome structure and biogeochemical cycles. Research Team    …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and … and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, researchers have … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… Register here Book your stay at the conference venue This inaugural event will bring … and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic studies.  This conference is inspired by …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial products.    … the genome of an oil-producing green alga, and demonstrated precise gene targeting in the genome in the November … and JLM) with support from the Gordon and Betty Moore Foundation (to SSM) for the work on  A. symbiontica (9203). RJC …
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