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Characterization of the Clostridium thermocellum AdhE, NfnAB, ferredoxin and Pfor proteins for their ability to support high titer ethanol production in Thermoanaerobacterium saccharolyticum
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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … DNA sequence binning algorithms, allowing them to reconstruct more near-complete genomes from soil metagenomes … its capacity to tackle metagenomes with low (40 genomes) to high (596 genomes) complexity. The environmental datasets …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements … oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting data … comes first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) has …
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From Textbook to Real World Applications
… When local students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in learning more about the … biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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JGI-KBase Panel at SACNAS
… contribution they make, whether as part of a course or internship, and before ever publishing a research article. Speakers will highlight opportunities for students through the Department … National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … and investigate how transporter proteins regulate the production of root exudates, which overall influences the health … experience in molecular biology and plant functional genomics, because this work is essential for improving crop …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … at the Massachusetts Institute of Technology he developed a high throughput approach for isolating individual bacterial … Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Back in the Lab: the 2023 Summer Intern Experience
… This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 …
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