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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… freshwater environments, the long-term ecological Harvard Forest project, large datasets from soil microbiome studies … environments, including oceans, lakes, mammalian guts, forests, and soils, ensuring a robust and representative training set for …
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Accelerating Metagenomics Discoveries with Deep Learning
… but computationally costly approaches such as BLAST and hidden Markov models (HMMs), “You just compute the distance …
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Mining Metagenomes for Cas Proteins
… elements by incorporating short sequences from infecting viruses and phages. In the event of a new infection, the … information encoded in CRISPR sequences to target the virus and release attack enzymes in the form of Cas enzymes to cut the DNA and disable the virus. In Science , a team led by researchers from the …
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What Happens Underground Influences Global Nutrient Cycles
… reaction networks, and also assessing the role of viruses in the soil microbiome. Another accepted proposal in … field campaign taking place at the Biosphere 2 Tropical Rainforest (B2 TRF) biome at the University of Arizona to learn … drought and increasing temperatures on tropical rainforests, which play a key role in the global carbon cycle. …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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JGI Announces 2026 New Investigator Portfolio
… plant metabolism across diverse ecosystems — from Antarctic soils and Icelandic hydrothermal systems to coastal wetlands …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… in natural soil? A:  It depends on the soil. Typically soils that have a high clay content are not well suited for … because metabolites are strongly sorbed to the clays. Sandy soils are much more likely to work well for metabolomics.  …
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How to Submit Sequencing Samples
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Igor Grigoriev
… machinery underlies the functional diversity of forest fungi.  Science . 2011; 333: 762-765. Gobler CJ et …
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