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To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … the goal is to create an entirely human-generated yeast genome. …

… cattails. In 2018, the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , who heads the  … armed with the proper permits, to the refuge to collect soil samples from multiple locations. Back in the classroom, …

This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together … large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — …

… production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating … , 2023 Wu et al. Structural characterization of a soil viral auxiliary metabolic gene product - a functional … Cell Chemical Biology , 2022 … R&D100 Award finalist 2019 SIMB Young Investigator Award 2013 Sustainable Biofuels …

… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the … and at HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the … of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the …

… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate … gene models in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative … et al., 2012. Phytozome: a comparative platform for green plant genomics.      Nucleic Acids Research 40, D1178. …

… elongata enjoys a dual lifestyle; it can thrive in the soil as a saprophyte, living off decaying organic matter, or … and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes … study from a JGI-led team uncovered giant viruses in the soil for the first time. The current study applied a … the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded …

… was the last major crop without a reference quality genome and now crop researchers can work toward advancing … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … Phytozome .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …